Matteo Rosati 8ebab832d5 move top-level modules into a real package

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01-_done_-move-top-level-modules.md

move top-level modules into a real package

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02-typed-command-inputs.md

move top-level modules into a real package

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03-split-cli-service-repository-formatting.md

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04-centralize-chroma-client-configuration.md

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06-add-ruff-mypy-configuration.md

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07-modernize-type-hints.md

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08-avoid-catching-baseexception.md

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09-domain-specific-cli-exceptions.md

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10-configurable-ingestion.md

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11-improve-file-handling.md

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12-review-dependencies.md

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13-robust-query-result-formatting.md

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14-clarify-delete-filter-semantics.md

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15-command-registration-registry.md

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16-add-verbose-logging.md

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17-exit-code-conventions.md

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18-architecture-documentation.md

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