move top-level modules into a real package
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# 16. Add Logging for Debuggability
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## Summary
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Add optional diagnostic logging for ingestion, query, and Chroma operations while keeping normal CLI output clean.
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## Implementation Steps
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- Configure Python's `logging` module in the CLI entrypoint.
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- Add a global `--verbose` flag to enable debug-level logs.
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- Log file loading, chunk counts, embedding calls, Chroma writes, collection operations, and query timing.
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- Send logs to stderr so stdout remains reserved for command output.
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- Avoid logging document contents or full embeddings.
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## Public Interface Changes
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- Add global CLI flag `--verbose`.
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- Normal output remains unchanged when verbose mode is not enabled.
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## Test Plan
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- Test parser behavior for `--verbose`.
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- Test that debug logs are suppressed by default.
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- Test that verbose mode emits representative diagnostic logs to stderr.
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- Smoke test `add-data` and `query` with verbose mode enabled.
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## Assumptions
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- A single global verbosity level is enough for now.
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- Structured logging means consistent logger names and message fields, not a JSON logging format.
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