add ruff. fix all linting

README.md

@@ -93,6 +93,26 @@ Run the test suite with pytest:
 uv run pytest -q
 ```
 
+## Development Checks
+
+Run Ruff linting:
+
+```bash
+uv run ruff check .
+```
+
+Check Ruff formatting:
+
+```bash
+uv run ruff format --check .
+```
+
+Run static type checking with mypy:
+
+```bash
+uv run mypy .
+```
+
 ## Commands
 
 ```text

chromy/chroma_functions.py

@@ -1,9 +1,12 @@
-from typing import List
+from __future__ import annotations
+
+from collections.abc import Sequence
+from typing import cast
 from uuid import uuid4
 
 import chromadb
 from chromadb.api import ClientAPI
-from chromadb.api.types import QueryResult
+from chromadb.api.types import QueryResult, Where
 from chromadb.errors import NotFoundError
 
 from chromy.embed import EmbeddingRecord
@@ -22,7 +25,7 @@ def _get_client_and_collection(
     return client, collection
 
 
-def list_collections() -> List[str]:
+def list_collections() -> list[str]:
     client = chromadb.PersistentClient()
     collections = client.list_collections()
 
@@ -46,7 +49,7 @@ def delete_collection(name: str) -> None:
 
 def delete_data(collection_name: str, where: dict[str, str]) -> int:
     _, collection = _get_client_and_collection(collection_name)
-    result = collection.delete(where=where)
+    result = collection.delete(where=cast(Where, where))
 
     return int(result.get("deleted", 0))
 
@@ -57,17 +60,19 @@ def count_collection(collection_name: str) -> int:
     return collection.count()
 
 
-def add_data(collection_name: str, data: List[EmbeddingRecord], file_name: str) -> None:
+def add_data(collection_name: str, data: list[EmbeddingRecord], file_name: str) -> None:
     if not data:
         return
 
     _, collection = _get_client_and_collection(collection_name)
 
+    embeddings: list[Sequence[float]] = [record["embedding"] for record in data]
+
     collection.add(
         ids=[str(uuid4()) for _ in data],
         metadatas=[{"file_name": file_name} for _ in data],
         documents=[record["text"] for record in data],
-        embeddings=[record["embedding"] for record in data],
+        embeddings=embeddings,
     )
 
 
@@ -78,7 +83,10 @@ def query_data(collection_name: str, texts: list[str]) -> QueryResult:
             "documents": [],
             "metadatas": [],
             "distances": [],
-            "embeddings": [],
+            "embeddings": None,
+            "uris": None,
+            "data": None,
+            "included": ["documents", "metadatas", "distances"],
         }
 
     _, collection = _get_client_and_collection(collection_name)

chromy/chunk_functions.py

@@ -1,17 +1,19 @@
+from __future__ import annotations
+
 from pathlib import Path
-from typing import List
+from typing import cast
 
 import semchunk
 
 
-def chunk_text(text: str, chunk_size: int = 800) -> List[str]:
+def chunk_text(text: str, chunk_size: int = 800) -> list[str]:
     chunker = semchunk.chunkerify("gpt-4", chunk_size)
     chunks = chunker(text)
 
-    return chunks
+    return cast("list[str]", chunks)
 
 
-def chunk_file(filename: str, chunk_size: int = 800) -> List[str]:
+def chunk_file(filename: str, chunk_size: int = 800) -> list[str]:
     contents = Path(filename).read_text()
 
     return chunk_text(contents, chunk_size)

chromy/cli_app.py

@@ -3,7 +3,7 @@ from __future__ import annotations
 from argparse import Namespace
 from collections.abc import Callable, Sequence
 from dataclasses import dataclass
-from typing import Generic, Protocol, TypeVar, assert_never
+from typing import Generic, TypeVar, assert_never
 
 from chromadb.errors import InternalError, NotFoundError
 
@@ -27,17 +27,19 @@ from chromy.handlers.delete_collection import (
 from chromy.handlers.list_collections import handle_list_collections
 from chromy.handlers.query import handle_query
 
-
 CommandT = TypeVar("CommandT", bound=CommandInput)
-CollectionCommandT = TypeVar("CollectionCommandT", bound="HasCollection")
+CollectionCommandT = TypeVar(
+    "CollectionCommandT",
+    DeleteCollectionInput,
+    CountCollectionInput,
+    AddDataInput,
+    QueryInput,
+    DeleteRecordsInput,
+)
 CommandHandler = Callable[[CommandT], int]
 ErrorMessageBuilder = Callable[[CommandT, Exception], str]
 
 
-class HasCollection(Protocol):
-    collection: str
-
-
 @dataclass(frozen=True, slots=True)
 class CliErrorHandler(Generic[CommandT]):
     exception_type: type[Exception]
@@ -93,20 +95,20 @@ def execute_command(args: Namespace) -> int:
             return _run_command(
                 command_input,
                 handle_delete_collection,
-                (_collection_not_found_handler(),),
+                (_collection_not_found_handler(DeleteCollectionInput),),
             )
         case CountCollectionInput():
             return _run_command(
                 command_input,
                 handle_count_collection,
-                (_collection_not_found_handler(),),
+                (_collection_not_found_handler(CountCollectionInput),),
             )
         case AddDataInput():
             return _run_command(
                 command_input,
                 handle_add_data,
                 (
-                    _collection_not_found_handler(),
+                    _collection_not_found_handler(AddDataInput),
                     CliErrorHandler(
                         exception_type=FileNotFoundError,
                         message=_file_not_found_message,
@@ -117,14 +119,14 @@ def execute_command(args: Namespace) -> int:
             return _run_command(
                 command_input,
                 handle_query,
-                (_collection_not_found_handler(),),
+                (_collection_not_found_handler(QueryInput),),
             )
         case DeleteRecordsInput():
             return _run_command(
                 command_input,
                 handle_delete_records,
                 (
-                    _collection_not_found_handler(),
+                    _collection_not_found_handler(DeleteRecordsInput),
                     CliErrorHandler(
                         exception_type=ValueError,
                         message=_exception_message,
@@ -157,14 +159,16 @@ def _collection_already_exists_message(
     return f"Collection '{command.collection}' already exists."
 
 
-def _collection_not_found_handler() -> CliErrorHandler[CollectionCommandT]:
+def _collection_not_found_handler(
+    _: type[CollectionCommandT],
+) -> CliErrorHandler[CollectionCommandT]:
     return CliErrorHandler(
         exception_type=NotFoundError,
         message=_collection_not_found_message,
     )
 
 
-def _collection_not_found_message(command: HasCollection, _: Exception) -> str:
+def _collection_not_found_message(command: CollectionCommandT, _: Exception) -> str:
     return f"Collection '{command.collection}' does not exist."
 
 

chromy/cli_parser.py

@@ -47,7 +47,9 @@ COMMAND_SPECS: tuple[CommandSpec, ...] = (
     CommandSpec(
         name="add-data",
         aliases=("ad",),
-        help="Chunk, embed, and add a file to a collection in the local Chroma database.",
+        help=(
+            "Chunk, embed, and add a file to a collection in the local Chroma database."
+        ),
         arguments=(
             ArgumentSpec("collection", "Name of the target collection."),
             ArgumentSpec(
@@ -93,15 +95,20 @@ def _add_command(
     )
 
     for argument in command.arguments:
-        argument_kwargs: dict[str, object] = {"help": argument.help}
-
-        if argument.metavar is not None:
-            argument_kwargs["metavar"] = argument.metavar
-
         if argument.name.startswith("-"):
-            argument_kwargs["required"] = argument.required
+            subparser.add_argument(
+                argument.name,
+                help=argument.help,
+                metavar=argument.metavar,
+                required=argument.required,
+            )
+            continue
 
-        subparser.add_argument(argument.name, **argument_kwargs)
+        subparser.add_argument(
+            argument.name,
+            help=argument.help,
+            metavar=argument.metavar,
+        )
 
     subparser.set_defaults(command=command.name)
 

chromy/embed.py

@@ -1,14 +1,16 @@
-from typing import List, TypedDict
+from __future__ import annotations
+
+from typing import TypedDict
 
 from chromadb.utils.embedding_functions import DefaultEmbeddingFunction
 
 
 class EmbeddingRecord(TypedDict):
     text: str
-    embedding: List[float]
+    embedding: list[float]
 
 
-def embed(chunks: List[str]) -> List[EmbeddingRecord]:
+def embed(chunks: list[str]) -> list[EmbeddingRecord]:
     if not chunks:
         return []
 
@@ -22,5 +24,5 @@ def embed(chunks: List[str]) -> List[EmbeddingRecord]:
                 embedding.tolist() if hasattr(embedding, "tolist") else list(embedding)
             ),
         }
-        for text, embedding in zip(chunks, embeddings)
+        for text, embedding in zip(chunks, embeddings, strict=False)
     ]

chromy/handlers/delete_collection.py

@@ -8,15 +8,13 @@ def _parse_where_clause(where_clause: str) -> dict[str, str]:
     condition, separator, value = where_clause.partition("=")
 
     if separator == "":
-        raise ValueError(
+        raise ValueError("Invalid --where value. Expected <condition>=<value>.")
-            "Invalid --where value. Expected <condition>=<value>.")
 
     condition = condition.strip()
     value = value.strip()
 
     if not condition or not value:
-        raise ValueError(
+        raise ValueError("Invalid --where value. Expected <condition>=<value>.")
-            "Invalid --where value. Expected <condition>=<value>.")
 
     return {condition: value}
 

chromy/handlers/list_collections.py

@@ -1,7 +1,7 @@
 from __future__ import annotations
 
-from chromy.command_inputs import ListCollectionsInput
 from chromy.chroma_functions import list_collections
+from chromy.command_inputs import ListCollectionsInput
 from chromy.utilities import print_lines
 
 

chromy/utilities.py

@@ -1,6 +1,7 @@
-from chromadb import QueryResult
 from collections.abc import Mapping
 
+from chromadb import QueryResult
+
 from chromy.chroma_functions import add_data, query_data
 from chromy.chunk_functions import chunk_file
 from chromy.embed import embed

plans/06-_done_-add-ruff-mypy-configuration.md

@@ -1,4 +1,4 @@
-# 6. Add Ruff and Mypy Configuration
+# 6. Add Ruff and Mypy Configuration [DONE]
 
 ## Summary
 

pyproject.toml

@@ -26,6 +26,51 @@ packages = ["chromy", "chromy.handlers"]
 
 [dependency-groups]
 dev = [
+    "mypy>=1.18.2",
     "nuitka[onefile]>=4.0.8",
     "pytest>=9.0.2",
+    "ruff>=0.14.8",
+]
+
+[tool.ruff]
+line-length = 88
+target-version = "py312"
+
+[tool.ruff.lint]
+select = [
+    "B",
+    "E",
+    "F",
+    "I",
+    "SIM",
+]
+
+[tool.ruff.format]
+quote-style = "double"
+indent-style = "space"
+line-ending = "auto"
+
+[tool.mypy]
+python_version = "3.12"
+files = [
+    "chromy",
+    "tests",
+]
+strict = true
+warn_return_any = true
+warn_unused_ignores = true
+no_implicit_reexport = true
+show_error_codes = true
+
+[[tool.mypy.overrides]]
+module = [
+    "chromadb.*",
+    "semchunk.*",
+]
+ignore_missing_imports = true
+
+[[tool.mypy.overrides]]
+module = "chromy.chunk_functions"
+disable_error_code = [
+    "attr-defined",
 ]

tests/test_cli_command_inputs.py

@@ -20,22 +20,19 @@ from chromy.command_inputs import (
 
 class BuildCommandInputTests(unittest.TestCase):
     def test_parser_converts_list_collections_and_alias(self) -> None:
-        self.assertEqual(_parse_input(
+        self.assertEqual(_parse_input(["list-collections"]), ListCollectionsInput())
-            ["list-collections"]), ListCollectionsInput())
         self.assertEqual(_parse_input(["lc"]), ListCollectionsInput())
 
     def test_parser_converts_create_collection_and_alias(self) -> None:
         expected = CreateCollectionInput(collection="notes")
 
-        self.assertEqual(_parse_input(
+        self.assertEqual(_parse_input(["create-collection", "notes"]), expected)
-            ["create-collection", "notes"]), expected)
         self.assertEqual(_parse_input(["cc", "notes"]), expected)
 
     def test_parser_converts_delete_collection_and_alias(self) -> None:
         expected = DeleteCollectionInput(collection="notes")
 
-        self.assertEqual(_parse_input(
+        self.assertEqual(_parse_input(["delete-collection", "notes"]), expected)
-            ["delete-collection", "notes"]), expected)
         self.assertEqual(_parse_input(["dc", "notes"]), expected)
 
     def test_parser_converts_count_and_alias(self) -> None:
@@ -45,8 +42,7 @@ class BuildCommandInputTests(unittest.TestCase):
         self.assertEqual(_parse_input(["co", "notes"]), expected)
 
     def test_parser_converts_add_data_and_alias(self) -> None:
-        expected = AddDataInput(
+        expected = AddDataInput(collection="notes", file="romeo_and_juliet.txt")
-            collection="notes", file="romeo_and_juliet.txt")
 
         self.assertEqual(
             _parse_input(["add-data", "notes", "romeo_and_juliet.txt"]),
@@ -64,12 +60,10 @@ class BuildCommandInputTests(unittest.TestCase):
             _parse_input(["query", "notes", "Where is Romeo?"]),
             expected,
         )
-        self.assertEqual(_parse_input(
+        self.assertEqual(_parse_input(["q", "notes", "Where is Romeo?"]), expected)
-            ["q", "notes", "Where is Romeo?"]), expected)
 
     def test_parser_converts_delete_records_and_alias(self) -> None:
-        expected = DeleteRecordsInput(
+        expected = DeleteRecordsInput(collection="notes", where="file_name=play.txt")
-            collection="notes", where="file_name=play.txt")
 
         self.assertEqual(
             _parse_input(["delete", "notes", "--where", "file_name=play.txt"]),
@@ -81,8 +75,7 @@ class BuildCommandInputTests(unittest.TestCase):
         )
 
     def test_invalid_delete_filter_keeps_user_facing_error(self) -> None:
-        args = Namespace(command="delete", collection="notes",
+        args = Namespace(command="delete", collection="notes", where="file_name")
-                         where="file_name")
         output = io.StringIO()
 
         with redirect_stdout(output):

tests/test_handlers.py

@@ -26,13 +26,14 @@ from chromy.handlers.delete_collection import (
 from chromy.handlers.list_collections import handle_list_collections
 from chromy.handlers.query import handle_query
 
-
 CommandT = TypeVar("CommandT")
 
 
 class HandlerTests(unittest.TestCase):
     def test_list_collections_prints_empty_message(self) -> None:
-        with patch("chromy.handlers.list_collections.list_collections", return_value=[]):
+        with patch(
+            "chromy.handlers.list_collections.list_collections", return_value=[]
+        ):
             exit_code, output = _capture_output(
                 handle_list_collections,
                 ListCollectionsInput(),
@@ -133,8 +134,7 @@ class HandlerTests(unittest.TestCase):
         ) as delete_data:
             exit_code, output = _capture_output(
                 handle_delete_records,
-                DeleteRecordsInput(collection="notes",
+                DeleteRecordsInput(collection="notes", where=" file_name = play.txt "),
-                                   where=" file_name = play.txt "),
             )
 
         delete_data.assert_called_once_with("notes", {"file_name": "play.txt"})

uv.lock

@@ -2,7 +2,8 @@ version = 1
 revision = 3
 requires-python = ">=3.12"
 resolution-markers = [
-    "python_full_version >= '3.14'",
+    "python_full_version >= '3.15'",
+    "python_full_version == '3.14.*'",
     "python_full_version == '3.13.*'",
     "python_full_version < '3.13'",
 ]
@@ -267,8 +268,10 @@ dependencies = [
 
 [package.dev-dependencies]
 dev = [
+    { name = "mypy" },
     { name = "nuitka", extra = ["onefile"] },
     { name = "pytest" },
+    { name = "ruff" },
 ]
 
 [package.metadata]
@@ -284,8 +287,10 @@ requires-dist = [
 
 [package.metadata.requires-dev]
 dev = [
+    { name = "mypy", specifier = ">=1.18.2" },
     { name = "nuitka", extras = ["onefile"], specifier = ">=4.0.8" },
     { name = "pytest", specifier = ">=9.0.2" },
+    { name = "ruff", specifier = ">=0.14.8" },
 ]
 
 [[package]]
@@ -691,6 +696,66 @@ wheels = [
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 ]
 
+[[package]]
+name = "librt"
+version = "0.9.0"
+source = { registry = "https://pypi.org/simple" }
+sdist = { url = "https://files.pythonhosted.org/packages/eb/6b/3d5c13fb3e3c4f43206c8f9dfed13778c2ed4f000bacaa0b7ce3c402a265/librt-0.9.0.tar.gz", hash = "sha256:a0951822531e7aee6e0dfb556b30d5ee36bbe234faf60c20a16c01be3530869d", size = 184368, upload-time = "2026-04-09T16:06:26.173Z" }
+wheels = [
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